I believe those you listed all should stack.
If the MT ED tree one doesnt stack that doesnt make sense.
BE one is the base charge rate booster.
Filigree should stack with everything
Also the 2 Runearms (Machination of Madness and Leg. Tovens Hammer)
Runearm's have a upcharge and discharge cycle. Most of those just effect the upcharge speed but not the dischage after firing. Machro's epic moment is the only one that effects the discharge speed too; which is kinda nifty.